Artificial embodied circuits uncover neural architectures of vertebrate visuomotor behaviors

Xiangxiao Liu, Matthew D. Loring, Luca Zunino, Kaitlyn E. Fouke, François A. Longchamp, Alexandre Bernardino, Auke J. Ijspeert, & Eva A. Naumann

bioRxiv, p. 2024.12.19.629427, 20-Dec-2024. doi: https://doi.org/10.1101/2024.12.19.629427

Divergent Visuomotor Strategies in Teleosts: Neural Circuit Mechanisms in Zebrafish and Danionella cerebrum

Kaitlyn E. Fouke, Zichen He, Matthew D. Loring, and Eva A. Naumann

Neuroscience, bioRxiv, 23-Nov-2024. doi: https://doi.org/10.1101/2024.11.22.624938

Imaging across multiple spatial scales with the multi-camera array microscope

Mark Harfouche, Kanghyun Kim, Kevin C. Zhou, Pavan Chandra Konda, Sunanda Sharma, Eric E. Thomson, Colin Cooke, Shiqi Xu, Lucas Kreiss, Amey Chaware, Xi Yang, Xing Yao, Vinayak Pathak, Martin Bohlen, Ron Appel, Aurélien Bègue, Clare Cook, Jed Doman, John Efromson, Gregor Horstmeyer, Jaehee Park, Paul Reamey, Veton Saliu, Eva Naumann, and Roarke Horstmeyer

Optica, vol. 10, no. 4, p. 471, Apr. 2023. doi: https://doi.org/10.1364/OPTICA.478010

Gigapixel imaging with a novel multi-camera array microscope

Eric Thomson, Mark Harfouche, Kanghyun Kim, Pavan Konda, Catherine W. Seitz, Colin Cooke, Shiqi Xu, Whitney S. Jacobs, Robin Blazing, Yang Chen, Sunanda Sharma, Timothy W. Dunn, Jaehee Park, Roarke W. Horstmeyer*, & Eva A. Naumann*

eLife (2022), doi: https://doi.org/10.7554/eLife.74988

improv: A flexible software platform for adaptive neuroscience experiments

Anne Draelos, Maxim Nikitchenko, Chaichontat Sriworarat, Daniel Sprague, Matthew D. Loring, Eftychios Pnevmatikakis, Andrea Giovannucci, Eva A. Naumann*, & John M. Pearson*

bioarXiv preprint. 2021 February, doi: https://doi.org/10.1101/2021.02.22.432006

Whole-brain interactions underlying zebrafish behavior

Matthew D. Loring, Eric E. Thomson, & Eva A. Naumann

Current Opinion in Neurobiology (2020) doi:10.1016/j.conb.2020.09.011

Online neural connectivity estimation with ensemble stimulation

Anne Draelos, Eva A. Naumann, & John M. Pearson

arXiv preprint arXiv:2007.13911v2. 2020 July/ NeurIPS 2020

Imaging the behavior and neural activity of freely moving organisms with a gigapixel microscope

Mark Harfouche, Timothy W. Dunn, Eva A. Naumann, & Roarke Horstmeyer

Optics in the Life Sciences Congress 2019, Optical Society of America, 2019, paper BT3A.3. doi: https://doi.org/10.1364/BRAIN.2019.BT3A.3

From whole-brain data to functional circuit models: the zebrafish optomotor response

Eva A. Naumann, James E. Fitzgerald, Timothy W. Dunn, Jason Rihel, Haim Sompolinsky, & Florian Engert

Cell (2016) doi:10.1016/j.cell.2016.10.019

Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion

Timothy W. Dunn*, Yu Mu*, Sujatha Narayan, Owen Randlett, Eva A. Naumann, Chao-Tsung Yang, Alexander F. Schier, Jeremy Freeman, Florian Engert, & Misha B. Ahrens

eLife (2016) doi:10.7554/eLife.12741

Neural circuits underlying visually evoked escapes in larval zebrafish

Timothy W. Dunn, Christoph Gebhardt, Eva A. Naumann, Misha B. Ahrens, Florian Engert, & Filippo Del Bene

Neuron (2016) doi:10.1016/j.neuron.2015.12.021

Whole-brain activity mapping onto a zebrafish brain atlas

Owen Randlett, Caroline L. Wee, Eva A. Naumann, Onyeka Nnaemeka, David Schoppik, James E Fitzgerald, Ruben Portugues, Alix M B Lacoste, Clemens Riegler, Florian Engert, & Alexander F Schier

Nature Methods (2015) doi:10.1038/nmeth.3581

Monitoring neural activity with bioluminescence during natural behavior

Eva A. Naumann*, Adam R. Kampff*, David A. Prober, Alexander F. Schier, & Florian Engert

Nature Neuroscience (2010) doi:10.1038/nn.2518